A 12‑lead electrocardiography (ECG)-based convolutional neural network (CNN) model can detect hypertrophic cardiomyopathy (HCM). However, since these models do not rely on discrete measurements as inputs, it is not apparent what drives their performance. We hypothesized that saliency maps could be used to visually identify ECG segments that contribute to a CNN’s robust classification of HCM.
We derived a new one‑lead (lead I) CNN model based on median beats using the same methodology and cohort used for the original 12‑lead CNN model (3047 patients with HCM, and 63,926 sex- and age-matched non-HCM controls). One‑lead, median-beat saliency maps were generated and visually evaluated in an independent cohort of 100 patients with a diagnosis of HCM and a high artificial intelligence (AI)-ECG-HCM probability score to determine which ECG segments contributed to the model’s detection of HCM.
The one‑lead, median-beat CNN had an AUC of 0.90 (95% CI 0.89-0.92) for HCM detection, similar to the original 12‑lead ECG model. In the independent HCM cohort (n = 100), saliency maps highlighted the ST-T segment in 92 ECGs, the atrial depolarization segment in 12 ECGs, and the QRS complex in 5 ECGs.
Saliency maps of a one‑lead, median-beat-based CNN model identified perturbations in ventricular repolarization as the main region of interest in detecting HCM.

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